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Seven Bridges Genomics Inc patents


Recent patent applications related to Seven Bridges Genomics Inc. Seven Bridges Genomics Inc is listed as an Agent/Assignee. Note: Seven Bridges Genomics Inc may have other listings under different names/spellings. We're not affiliated with Seven Bridges Genomics Inc, we're just tracking patents.

ARCHIVE: New 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 | Company Directory "S" | Seven Bridges Genomics Inc-related inventors


Computer method and system of identifying genomic mutations using graph-based local assembly

Computer-implemented methods and systems for performing a local assembly of a genomic region of interest include the de novo or assisted creation of a directed graph, such as a directed acyclic graph (DAG), from a plurality of obtained nucleotide sequence reads. First and second sequence reads are aligned to each... Seven Bridges Genomics Inc

Systems and methods for reconciling variants in sequence data relative to reference sequence data

Techniques for identifying variations in sequence data relative to reference sequence data. The techniques include accessing information specifying multiple sets of variants in the sequence data relative to reference sequence data, each of the multiple sets of variants being generated by using a respective variant identification technique; and determining, using... Seven Bridges Genomics Inc

Method and identifying tandem repeats in a nucleotide sequence

A method and corresponding apparatus for identifying tandem repeats in a nucleotide sequence is described. Tandem repeats can be identified by identifying one or more lines present in a self-alignment plot of the nucleotide sequence. The disclosed method includes identifying one or more square-shaped subregions (SSS) representing a tandem repeat... Seven Bridges Genomics Inc

Methods and systems for stream-processing of biomedical data

A method for stream-processing biomedical data includes receiving, by a file system on a computing device, a first request for access to at least a first portion of a file stored on a remotely located storage device. The method includes receiving, by the file system, a second request for access... Seven Bridges Genomics Inc

Systems and methods for genotyping with graph reference

Genomic references are structured as a reference graph that represents diploid genotypes in organisms. A path through a series of connected nodes and edges represents a genetic sequence. Genetic variation within a diploid organism is represented by multiple paths through the reference graph. The graph may be transformed into a... Seven Bridges Genomics Inc

Systems and methods for encoding genetic variation for a population

In one embodiment, a method of encoding variation data for a population comprises receiving, by a variant encoding engine executing on a processor, information describing genetic variation of a population of individuals. The information comprises a plurality of variable sites within the reference genome of the population and the genotypes... Seven Bridges Genomics Inc

Methods and systems for generating, by a visual query builder, a query of a genomic data store

A method for generating a query of a genomic data store includes receiving, by a query generator executing on a computing device, from a graphical user interface, an identification of a first entity of a first entity class for inclusion in a resource description framework (RDF) query. The method includes... Seven Bridges Genomics Inc

Systems and methods for analyzing circulating tumor dna

The invention provides oncogenomic methods for detecting tumors by identifying circulating tumor DNA. A patient-specific reference directed acyclic graph (DAG) represents known human genomic sequences and non-tumor DNA from the patient as well as known tumor-associated mutations. Sequence reads from cell-free plasma DNA from the patient are mapped to the... Seven Bridges Genomics Inc

Systems and methods for smart tools in sequence pipelines

The invention relates to bioinformatics pipelines and wrapper scripts that call executables in those pipelines and that also identify beneficial changes to the pipelines. A tool in a pipeline has a smart wrapper that can cause the tool to analyze the sequence data it receives but that can also select... Seven Bridges Genomics Inc

Genetic analysis systems and methods

Genomes of different species may be embodied as a graph in which conserved parts of multiple genomes are stored at a fixed location in memory and accessed via spatial addressing. The graph branches into plural paths, each defined by pointers to other fixed locations in the memory, where the genomes... Seven Bridges Genomics Inc

Systems and methods for adaptive local alignment for graph genomes

Systems and methods for analyzing genomic information can include obtaining a sequence read including genetic information; identifying, within a graph representing a reference genome, a plurality of candidate mapping positions that relate to the genetic information, the graph comprising nodes representing genetic sequences and edges connecting pairs of nodes; determining,... Seven Bridges Genomics Inc

Biological graph or sequence serialization

Methods of the invention include representing biological data in a memory subsystem within a computer system with a data structure that is particular to a location in the memory subsystem and serializing the data structure into a stream of bytes that can be deserialized into a clone of the data... Seven Bridges Genomics Inc

Systems and methods for epigenetic analysis

The invention provides systems and methods for determining patterns of modification to a genome of a subject by representing the genome using a graph, such as a directed acyclic graph (DAG) with divergent paths for regions that are potentially subject to modification, profiling segments of the genome for evidence of... Seven Bridges Genomics Inc

Systems and methods for mitochondrial analysis

The invention provides methods of analyzing an individual's mtDNA by transforming available reference sequences into a directed graph that compactly represents all the information without duplication and comparing sequence reads from the mtDNA to the graph to identify the individual or describe their mtDNA. A directed graph can represent all... Seven Bridges Genomics Inc

Systems and methods for analyzing viral nucleic acids

The invention provides systems and methods for analyzing viruses by representing viral genetic diversity with a directed acyclic graph (DAG), which allows genetic sequencing technology to detect rare variations and represent otherwise difficult-to-document diversity within a sample. Additionally, a host-specific sequence DAG can be used to effectively segregate viral nucleic... Seven Bridges Genomics Inc








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